Protein motif database

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August undefined, 2024

Webb8 mars 2024 · Radboud University researchers have developed scANANSE, a software pipeline for gene regulatory network analysis and motif enrichment using single-cell RNA and ATAC datasets. The scANANSE pipeline can be run from either R or Python. First, it exports data from standard single-cell objects. WebbTo date, the structures of two pentapeptide-repeat proteins (PRPs) have been determined, with the tandem pentapeptide-repeat sequences observed to adopt a novel type of right-handed quadrilateral beta-helix, or Rfr-fold, in both structures.

DAtA: Database of Arabidopsis thaliana Annotation - PMC

Webb1 dec. 2016 · This database contains more than 200 entries with details of interaction such as interacting protein name and their synonyms, their UniProt-ID, source organism, target name and its sequences,... WebbAn example of a database that uses patterns is PROSITE . Figure 13 When creating patterns, a conserved motif is used to build a regular expression. The pattern illustrated … imagine jean philippe marthely

IQGAP1 IQ motif containing GTPase activating protein 1 [ (fishing …

WebbThe PRINTS database of protein 'fingerprints' is described. Fingerprints comprise sets of motifs excised from conserved regions of sequence alignments, their diagnostic power … http://homepages.cs.ncl.ac.uk/anil.wipat/home.formal/Bioinfoweb/section3/aboutMotifs.htm WebbThe presence of a particular motif within a protein sequence can be used to suggest functions for uncharacterised proteins. A number of databases have been constructed … imagine key sold out

The EMOTIF database HSLS - University of Pittsburgh

WebbProteins & Proteomes Database UniProtKB/Swiss-Prot is the expertly curated component of UniProtKB (produced by the UniProt consortium). It contains hundreds of thousands … WebbIf any patterns are found MotifFinder then searches both protein sequence (Swiss-Prot or PIR1) and structural (PDB) databases for those sequences and structures that contain the patterns. The result is given in graphical representations using PostScript codes, where you can view the location of the pattern on the 3-D structure and in relation to known … imagine key pass blackout datesWebba) InterPro is an integrated pattern database designed to unify multiple databases for protein domains and functional sites b) This database integrates information from PROSITE, Pfam, PRINTS, ProDom, and SMART databases c) Only overlapping motifs and domains in a protein sequence derived by all five databases are included imagine key pass price

"WebbGTPase-activating proteins (GAPs) accelerate the intrinsic GTPase activity of Ras proteins, resulting in conversion of these GTPases from their active GTP-bound form to the inactive GDP-bound form (see 139150 ). IQ motif-containing GAP1 (IQGAP1; 603379) was identified based on its homology to a RasGAP homolog from S. pombe, Sar1. " - Protein motif database

Protein motif database

dipwmsearch: a Python package for searching di-PWM motifs ...

Webb23 nov. 2024 · Peptides in this database have been found to target different types of tumors that include breast, lung, prostate, melanoma, colon, etc. These peptides have some common motifs including RGD (Arg-Gly-Asp) and NGR (Asn-Gly-Arg) motifs, which specifically recognize tumor angiogenic markers. WebbRecognition of accessory protein motifs by the gamma-adaptin ear domain of GGA3. Miller GJ, Mattera R, Bonifacino JS, Hurley JH. Nat Struct Biol. 2003 Aug;10 (8):599-606. doi: 10.1038/nsb953. PubMed Article.

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http://guertinlab.cam.uchc.edu/meds5420_2024/230322_Lec17_motifs_query.html Webb5 feb. 2015 · Conclusions. CLIPdb is a more complete and better-curated database focused on CLIP-seq data sets than those currently available, providing genome-wide, high-resolution binding sites. Characterizing the …

WebbMotif scanning means finding all known motifs that occur in a sequence. This form lets you paste a protein sequence, select the collections of ... If your proteins of interest are … http://slim.icr.ac.uk/pssmsearch/

Webb22 feb. 2024 · Database of protein domains, families and functional sites SARS-CoV-2 relevant PROSITE motifs PROSITE consists of documentation entries describing protein … Database of protein domains, families and functional sites: SARS-CoV-2 relevant … The choice of protein database includes UniProtKB, PDB, a custom database or … The ProRule section of PROSITE is constituted of manually created rules … Expasy is operated by the SIB Swiss Institute of Bioinformatics Terms of Use … Downloads - ExPASy - PROSITE PROSITE - Database of protein families and domains; UniProt - the universal protein … PROSITE is funded by: The Swiss Federal Department of Economic Affairs, … By Number of Positive Hits - ExPASy - PROSITE WebbThe Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as …

Webb25 maj 2005 · The EMOTIF database is a collection of more than 170 000 highly specific and sensitive protein sequence motifs representing conserved biochemical properties …

Webb2 jan. 2024 · Background Protein–peptide interactions play a fundamental role in a wide variety of biological processes, such as cell signaling, regulatory networks, immune … imaginekidswear.comWebb1 jan. 1996 · Other Searchable Databases of Protein Families. PROSITE is a compilation of specific sites, patterns and profiles found in protein sequences ( 5). PRINTS ( 4), … imagine kids dentistry fountain coloradohttp://rbpdb.ccbr.utoronto.ca/ imagine kindergarten southportWebb1 jan. 2001 · All proteins are searched for protein motifs using eMotif and for protein similarity using the Blast search program . The blast results for each protein are parsed to remove the uninformative matches (self, hypothetical proteins etc.). The remaining top significant (blast score > 80) blast hit is added to the database. list of fertilizersWebbprotein coding gene IDs MGI:108224 NCBI Gene: 20293 Alliance gene page Transcription Start Sites 2 TSS Location & Maps more Sequence Map Chr11:81992671-81994225 bp, + strand From NCBI annotation of GRCm39 Genetic Map Chromosome 11, 49.90 cM Strain Comparison more SNPs within 2kb 26 from dbSNP Build 142 Strain Annotations 18 … list of festivals in louisiana 2023WebbProteins (UniProtKB) Species (Proteomes) Protein clusters (UniRef) Sequence archive (UniParc) Supporting data. Literature citations; Taxonomy; Keywords; Subcellular … list of festivals in april 2022Webbcalled PROSITE, of 337 protein motifs, based on the 15,409 proteins in the SWISSPROT14 database. Each motif in PROSITE has been defined so it occurs in nearly all members of … imagine key pass disneyland calendar